shamo
Quickstart guide
Install
Install binary dependencies
CGAL
Gmsh
GetDP
Install shamo
Pip
Setup.py
Usage
Mesh generation
Finite element model from labels
Finite element model from another model
Finite element model from surfaces with default mesh size
Finite element model from surfaces with constant mesh size
Finite element model from surfaces with per tissue mesh size
Finite element model from labels
EEG
EEG leadfield computation - On all ROI elements
EEG leadfield computation - On equidistant elements
EEG leadfield computation - On regular grid
EEG parametric leadfield computation - On all ROI elements
EEG parametric leadfield computation - On equidistant elements
EEG parametric leadfield computation - On regular grid
EEG parametric leadfield surrogate model
EEG parametric leadfield sensitivity analysis
HD-tDCS
HD-tDCS simulation
HD-tDCS simulation
HD-tDCS parametric simulation
Logging
API reference
FEM
EEG
Leadfield
HD-tDCS
Full reference
shamo.cli
shamo.cli.report
shamo.core
shamo.core.distributions
shamo.core.distributions.abc
shamo.core.distributions.constant
shamo.core.distributions.normal
shamo.core.distributions.uniform
shamo.core.fem
shamo.core.fem.fem
shamo.core.fem.field
shamo.core.fem.group
shamo.core.fem.sensors
shamo.core.fem.tissue
shamo.core.objects
shamo.core.objects.abc
shamo.core.objects.dir
shamo.core.objects.file
shamo.core.problems
shamo.core.problems.parametric
shamo.core.problems.single
shamo.core.solutions
shamo.core.solutions.parametric
shamo.core.solutions.single
shamo.core.surrogate
shamo.core.surrogate.abc
shamo.core.surrogate.masked_scalar
shamo.core.surrogate.scalar
shamo.eeg
shamo.eeg.leadfield
shamo.eeg.leadfield.parametric
shamo.eeg.leadfield.single
shamo.hd_tdcs
shamo.hd_tdcs.simulation
shamo.hd_tdcs.simulation.parametric
shamo.hd_tdcs.simulation.single
shamo.utils
shamo.utils.geometry
shamo.utils.geometry.Plane3D
shamo.utils.logging
shamo.utils.logging.stream_to_logger
shamo.utils.logging.subprocess_to_logger
shamo.utils.logging.StreamToLogger
shamo.utils.onelab
shamo.utils.onelab.get_elems_coords
shamo.utils.onelab.get_elems_subset
shamo.utils.onelab.gmsh_open
shamo.utils.onelab.pos_to_nii
shamo.utils.onelab.read_vector_file
shamo.utils.path
shamo.utils.path.get_relative_path
shamo
»
Index
Index
A
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
abs_dist() (shamo.utils.geometry.Plane3D method)
add() (shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissues.CompTissues method)
add_circle_sensor_on() (shamo.core.fem.fem.FEM method)
add_circle_sensors_from_tsv_on() (shamo.core.fem.fem.FEM method)
add_circle_sensors_on() (shamo.core.fem.fem.FEM method)
add_point_sensor() (shamo.core.fem.fem.FEM method)
add_point_sensors() (shamo.core.fem.fem.FEM method)
add_point_sensors_from_tsv() (shamo.core.fem.fem.FEM method)
add_rect_sensor_on() (shamo.core.fem.fem.FEM method)
adds() (shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissues.CompTissues method)
affine() (shamo.core.fem.fem.FEM property)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler property)
C
check() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
CircleSensor (class in shamo.core.fem.sensors.surface)
clear() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
CompABC (class in shamo.core.problems.single.components.abc)
CompFilePath (class in shamo.core.problems.single.components.file_path)
CompGridSampler (class in shamo.core.problems.single.components.grid_sampler)
CompParamTissueProp (class in shamo.core.problems.parametric.components.tissue_property)
CompParamValue (class in shamo.core.problems.parametric.components.value)
CompSensors (class in shamo.core.problems.single.components.sensors)
CompTissueProp (class in shamo.core.problems.single.components.tissue_property)
CompTissues (class in shamo.core.problems.single.components.tissues)
copy() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
current() (shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
D
dim() (shamo.core.fem.group.Group property)
dist() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
(shamo.utils.geometry.Plane3D method)
dist_type() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
DistABC (class in shamo.core.distributions.abc)
DistConstant (class in shamo.core.distributions.constant)
DistNormal (class in shamo.core.distributions.normal)
DistTruncNormal (class in shamo.core.distributions.normal)
DistUniform (class in shamo.core.distributions.uniform)
E
entities() (shamo.core.fem.group.Group property)
expect() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
F
FEM (class in shamo.core.fem.fem)
Field (class in shamo.core.fem.field)
field_from_array() (shamo.core.fem.fem.FEM method)
field_from_elems() (shamo.core.fem.fem.FEM method)
field_from_nii() (shamo.core.fem.fem.FEM method)
field_type() (shamo.core.fem.field.Field property)
fields() (shamo.core.fem.tissue.Tissue property)
finalize() (shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
fit() (shamo.core.surrogate.abc.SurrABC class method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar class method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii class method)
(shamo.core.surrogate.scalar.SurrScalar class method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield class method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV class method)
flush() (shamo.utils.logging.StreamToLogger method)
formula() (shamo.core.fem.field.Field property)
fromkeys() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
G
gen_formula() (shamo.core.fem.field.Field method)
gen_sobol() (shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
get() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
get_elems_coords() (in module shamo.utils.onelab)
get_elems_subset() (in module shamo.utils.onelab)
get_gp() (shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
get_matrix() (shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
get_params() (shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
get_relative_path() (in module shamo.utils.path)
(shamo.core.fem.fem.FEM method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
get_sobol() (shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
get_sub_file() (shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
get_sub_sols() (shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
get_x() (shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
gmsh_open() (in module shamo.utils.onelab)
gp_path() (shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
Group (class in shamo.core.fem.group)
group() (shamo.core.fem.group.Group property)
H
height() (shamo.core.fem.sensors.surface.RectSensor property)
I
is_sobol_available() (shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
items() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
J
j_pro_path() (shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
json_path() (shamo.core.fem.fem.FEM property)
(shamo.core.objects.abc.ObjABC property)
(shamo.core.objects.dir.ObjDir property)
(shamo.core.objects.file.ObjFile property)
(shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
K
keys() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
L
load() (shamo.core.distributions.abc.DistABC static method)
(shamo.core.distributions.constant.DistConstant static method)
(shamo.core.distributions.normal.DistNormal static method)
(shamo.core.distributions.normal.DistTruncNormal static method)
(shamo.core.distributions.uniform.DistUniform static method)
(shamo.core.fem.fem.FEM class method)
(shamo.core.objects.abc.ObjABC class method)
(shamo.core.objects.dir.ObjDir class method)
(shamo.core.objects.file.ObjFile class method)
(shamo.core.solutions.parametric.abc.SolParamABC class method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP class method)
(shamo.core.solutions.single.getdp.SolGetDP class method)
(shamo.core.surrogate.abc.SurrABC class method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar class method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii class method)
(shamo.core.surrogate.scalar.SurrScalar class method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield class method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield class method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef class method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield class method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ class method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV class method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim class method)
lower() (shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
M
mag_j_pro_path() (shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
markers() (shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
mask() (shamo.core.problems.single.components.grid_sampler.CompGridSampler property)
matrix_path() (shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
mesh_coords() (shamo.core.fem.sensors.abc.SensorABC property)
(shamo.core.fem.sensors.point.PointSensor property)
(shamo.core.fem.sensors.surface.CircleSensor property)
(shamo.core.fem.sensors.surface.RectSensor property)
(shamo.core.fem.sensors.surface.SurfSensorABC property)
mesh_from_array() (shamo.core.fem.fem.FEM method)
mesh_from_fem() (shamo.core.fem.fem.FEM method)
mesh_from_masks() (shamo.core.fem.fem.FEM method)
mesh_from_nii() (shamo.core.fem.fem.FEM method)
mesh_from_niis() (shamo.core.fem.fem.FEM method)
mesh_from_surfaces() (shamo.core.fem.fem.FEM method)
mesh_params() (shamo.core.fem.fem.FEM property)
mesh_path() (shamo.core.fem.fem.FEM property)
model_json_path() (shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
module
shamo.cli
shamo.cli.report
shamo.core
shamo.core.distributions
shamo.core.distributions.abc
shamo.core.distributions.constant
shamo.core.distributions.normal
shamo.core.distributions.uniform
shamo.core.fem
shamo.core.fem.fem
shamo.core.fem.field
shamo.core.fem.group
shamo.core.fem.sensors
shamo.core.fem.sensors.abc
shamo.core.fem.sensors.point
shamo.core.fem.sensors.surface
shamo.core.fem.tissue
shamo.core.objects
shamo.core.objects.abc
shamo.core.objects.dir
shamo.core.objects.file
shamo.core.problems
shamo.core.problems.parametric
shamo.core.problems.parametric.abc
shamo.core.problems.parametric.components
shamo.core.problems.parametric.components.tissue_property
shamo.core.problems.parametric.components.value
shamo.core.problems.parametric.getdp
shamo.core.problems.single
shamo.core.problems.single.abc
shamo.core.problems.single.components
shamo.core.problems.single.components.abc
shamo.core.problems.single.components.file_path
shamo.core.problems.single.components.grid_sampler
shamo.core.problems.single.components.sensors
shamo.core.problems.single.components.tissue_property
shamo.core.problems.single.components.tissues
shamo.core.problems.single.getdp
shamo.core.solutions
shamo.core.solutions.parametric
shamo.core.solutions.parametric.abc
shamo.core.solutions.parametric.getdp
shamo.core.solutions.single
shamo.core.solutions.single.getdp
shamo.core.surrogate
shamo.core.surrogate.abc
shamo.core.surrogate.masked_scalar
shamo.core.surrogate.scalar
shamo.eeg
shamo.eeg.leadfield
shamo.eeg.leadfield.parametric
shamo.eeg.leadfield.parametric.problem
shamo.eeg.leadfield.parametric.solution
shamo.eeg.leadfield.parametric.surrogate
shamo.eeg.leadfield.single
shamo.eeg.leadfield.single.problem
shamo.eeg.leadfield.single.solution
shamo.hd_tdcs
shamo.hd_tdcs.simulation
shamo.hd_tdcs.simulation.parametric
shamo.hd_tdcs.simulation.parametric.problem
shamo.hd_tdcs.simulation.parametric.solution
shamo.hd_tdcs.simulation.parametric.surrogate
shamo.hd_tdcs.simulation.single
shamo.hd_tdcs.simulation.single.problem
shamo.hd_tdcs.simulation.single.solution
shamo.utils
shamo.utils.geometry
shamo.utils.logging
shamo.utils.onelab
shamo.utils.path
mu() (shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
N
n_entities() (shamo.core.fem.group.Group property)
n_sensors() (shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
n_sources() (shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
name() (shamo.core.fem.fem.FEM property)
(shamo.core.objects.abc.ObjABC property)
(shamo.core.objects.dir.ObjDir property)
(shamo.core.objects.file.ObjFile property)
(shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
nii_from_pos() (shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
nii_path() (shamo.core.fem.fem.FEM property)
node() (shamo.core.fem.sensors.point.PointSensor property)
O
ObjABC (class in shamo.core.objects.abc)
ObjDir (class in shamo.core.objects.dir)
ObjFile (class in shamo.core.objects.file)
P
params() (shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
parent_path() (shamo.core.fem.fem.FEM property)
(shamo.core.objects.abc.ObjABC property)
(shamo.core.objects.dir.ObjDir property)
(shamo.core.objects.file.ObjFile property)
(shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
path() (shamo.core.fem.fem.FEM property)
(shamo.core.objects.abc.ObjABC property)
(shamo.core.objects.dir.ObjDir property)
(shamo.core.objects.file.ObjFile property)
(shamo.core.problems.single.components.file_path.CompFilePath property)
(shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.core.surrogate.abc.SurrABC property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
Plane3D (class in shamo.utils.geometry)
point() (shamo.core.fem.sensors.point.PointSensor property)
PointSensor (class in shamo.core.fem.sensors.point)
pop() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
popitem() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
pos_to_nii() (in module shamo.utils.onelab)
predict() (shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
predict_sol() (shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
ProbABC (class in shamo.core.problems.single.abc)
ProbEEGLeadfield (class in shamo.eeg.leadfield.single.problem)
ProbGetDP (class in shamo.core.problems.single.getdp)
ProbHDTDCSSim (class in shamo.hd_tdcs.simulation.single.problem)
ProbParamABC (class in shamo.core.problems.parametric.abc)
ProbParamEEGLeadfield (class in shamo.eeg.leadfield.parametric.problem)
ProbParamGetDP (class in shamo.core.problems.parametric.getdp)
ProbParamHDTDCSSim (class in shamo.hd_tdcs.simulation.parametric.problem)
R
radius() (shamo.core.fem.sensors.surface.CircleSensor property)
read_vector_file() (in module shamo.utils.onelab)
real_coords() (shamo.core.fem.sensors.abc.SensorABC property)
(shamo.core.fem.sensors.point.PointSensor property)
(shamo.core.fem.sensors.surface.CircleSensor property)
(shamo.core.fem.sensors.surface.RectSensor property)
(shamo.core.fem.sensors.surface.SurfSensorABC property)
RectSensor (class in shamo.core.fem.sensors.surface)
reference() (shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
references() (shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
rois() (shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
S
salib_bounds() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
salib_name() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
save() (shamo.core.fem.fem.FEM method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
sensor_type() (shamo.core.fem.sensors.abc.SensorABC property)
(shamo.core.fem.sensors.point.PointSensor property)
(shamo.core.fem.sensors.surface.CircleSensor property)
(shamo.core.fem.sensors.surface.RectSensor property)
(shamo.core.fem.sensors.surface.SurfSensorABC property)
SensorABC (class in shamo.core.fem.sensors.abc)
sensors() (shamo.core.fem.fem.FEM property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
set() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
set_matrix() (shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
setdefault() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
sets() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
shamo.cli
module
shamo.cli.report
module
shamo.core
module
shamo.core.distributions
module
shamo.core.distributions.abc
module
shamo.core.distributions.constant
module
shamo.core.distributions.normal
module
shamo.core.distributions.uniform
module
shamo.core.fem
module
shamo.core.fem.fem
module
shamo.core.fem.field
module
shamo.core.fem.group
module
shamo.core.fem.sensors
module
shamo.core.fem.sensors.abc
module
shamo.core.fem.sensors.point
module
shamo.core.fem.sensors.surface
module
shamo.core.fem.tissue
module
shamo.core.objects
module
shamo.core.objects.abc
module
shamo.core.objects.dir
module
shamo.core.objects.file
module
shamo.core.problems
module
shamo.core.problems.parametric
module
shamo.core.problems.parametric.abc
module
shamo.core.problems.parametric.components
module
shamo.core.problems.parametric.components.tissue_property
module
shamo.core.problems.parametric.components.value
module
shamo.core.problems.parametric.getdp
module
shamo.core.problems.single
module
shamo.core.problems.single.abc
module
shamo.core.problems.single.components
module
shamo.core.problems.single.components.abc
module
shamo.core.problems.single.components.file_path
module
shamo.core.problems.single.components.grid_sampler
module
shamo.core.problems.single.components.sensors
module
shamo.core.problems.single.components.tissue_property
module
shamo.core.problems.single.components.tissues
module
shamo.core.problems.single.getdp
module
shamo.core.solutions
module
shamo.core.solutions.parametric
module
shamo.core.solutions.parametric.abc
module
shamo.core.solutions.parametric.getdp
module
shamo.core.solutions.single
module
shamo.core.solutions.single.getdp
module
shamo.core.surrogate
module
shamo.core.surrogate.abc
module
shamo.core.surrogate.masked_scalar
module
shamo.core.surrogate.scalar
module
shamo.eeg
module
shamo.eeg.leadfield
module
shamo.eeg.leadfield.parametric
module
shamo.eeg.leadfield.parametric.problem
module
shamo.eeg.leadfield.parametric.solution
module
shamo.eeg.leadfield.parametric.surrogate
module
shamo.eeg.leadfield.single
module
shamo.eeg.leadfield.single.problem
module
shamo.eeg.leadfield.single.solution
module
shamo.hd_tdcs
module
shamo.hd_tdcs.simulation
module
shamo.hd_tdcs.simulation.parametric
module
shamo.hd_tdcs.simulation.parametric.problem
module
shamo.hd_tdcs.simulation.parametric.solution
module
shamo.hd_tdcs.simulation.parametric.surrogate
module
shamo.hd_tdcs.simulation.single
module
shamo.hd_tdcs.simulation.single.problem
module
shamo.hd_tdcs.simulation.single.solution
module
shamo.utils
module
shamo.utils.geometry
module
shamo.utils.logging
module
shamo.utils.onelab
module
shamo.utils.path
module
shape() (shamo.core.fem.fem.FEM property)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
sigma() (shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
sigmas() (shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.core.solutions.single.getdp.SolGetDP property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
sobol_path() (shamo.core.surrogate.masked_scalar.SurrMaskedScalar property)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii property)
(shamo.core.surrogate.scalar.SurrScalar property)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ property)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV property)
SolEEGLeadfield (class in shamo.eeg.leadfield.single.solution)
SolGetDP (class in shamo.core.solutions.single.getdp)
SolHDTDCSSim (class in shamo.hd_tdcs.simulation.single.solution)
SolParamABC (class in shamo.core.solutions.parametric.abc)
SolParamEEGLeadfield (class in shamo.eeg.leadfield.parametric.solution)
SolParamGetDP (class in shamo.core.solutions.parametric.getdp)
SolParamHDTDCSSim (class in shamo.hd_tdcs.simulation.parametric.solution)
solve() (shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
source() (shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
source_sp_path() (shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
stream_to_logger() (in module shamo.utils.logging)
StreamToLogger (class in shamo.utils.logging)
sub_class() (shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
sub_json_paths() (shamo.core.solutions.parametric.abc.SolParamABC property)
(shamo.core.solutions.parametric.getdp.SolParamGetDP property)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim property)
subprocess_to_logger() (in module shamo.utils.logging)
surf() (shamo.core.fem.sensors.surface.CircleSensor property)
(shamo.core.fem.sensors.surface.RectSensor property)
(shamo.core.fem.sensors.surface.SurfSensorABC property)
(shamo.core.fem.tissue.Tissue property)
SurfSensorABC (class in shamo.core.fem.sensors.surface)
SurrABC (class in shamo.core.surrogate.abc)
SurrEEGLeadfield (class in shamo.eeg.leadfield.parametric.surrogate)
SurrEEGLeadfieldToRef (class in shamo.eeg.leadfield.parametric.surrogate)
SurrMaskedScalar (class in shamo.core.surrogate.masked_scalar)
SurrMaskedScalarNii (class in shamo.core.surrogate.masked_scalar)
SurrMaskedScalarNiiJ (class in shamo.hd_tdcs.simulation.parametric.surrogate)
SurrMaskedScalarNiiMagJ (class in shamo.hd_tdcs.simulation.parametric.surrogate)
SurrMaskedScalarNiiV (class in shamo.hd_tdcs.simulation.parametric.surrogate)
SurrScalar (class in shamo.core.surrogate.scalar)
T
template() (shamo.core.problems.parametric.abc.ProbParamABC property)
(shamo.core.problems.parametric.getdp.ProbParamGetDP property)
(shamo.core.problems.single.getdp.ProbGetDP property)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield property)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield property)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim property)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim property)
Tissue (class in shamo.core.fem.tissue)
tissue() (shamo.core.fem.sensors.abc.SensorABC property)
(shamo.core.fem.sensors.point.PointSensor property)
(shamo.core.fem.sensors.surface.CircleSensor property)
(shamo.core.fem.sensors.surface.RectSensor property)
(shamo.core.fem.sensors.surface.SurfSensorABC property)
tissues() (shamo.core.fem.fem.FEM property)
to_2d() (shamo.utils.geometry.Plane3D method)
to_3d() (shamo.utils.geometry.Plane3D method)
to_param() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
to_pro_param() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
to_py_param() (shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
U
uniform_dist() (shamo.core.distributions.abc.DistABC property)
(shamo.core.distributions.constant.DistConstant property)
(shamo.core.distributions.normal.DistNormal property)
(shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
update() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
upper() (shamo.core.distributions.normal.DistTruncNormal property)
(shamo.core.distributions.uniform.DistUniform property)
use_grid() (shamo.core.problems.single.components.grid_sampler.CompGridSampler property)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield property)
use_path() (shamo.core.problems.single.components.file_path.CompFilePath property)
V
v_pro_path() (shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim property)
val() (shamo.core.distributions.constant.DistConstant property)
(shamo.core.problems.parametric.components.value.CompParamValue property)
values() (shamo.core.distributions.abc.DistABC method)
(shamo.core.distributions.constant.DistConstant method)
(shamo.core.distributions.normal.DistNormal method)
(shamo.core.distributions.normal.DistTruncNormal method)
(shamo.core.distributions.uniform.DistUniform method)
(shamo.core.fem.fem.FEM method)
(shamo.core.fem.field.Field method)
(shamo.core.fem.group.Group method)
(shamo.core.fem.sensors.abc.SensorABC method)
(shamo.core.fem.sensors.point.PointSensor method)
(shamo.core.fem.sensors.surface.CircleSensor method)
(shamo.core.fem.sensors.surface.RectSensor method)
(shamo.core.fem.sensors.surface.SurfSensorABC method)
(shamo.core.fem.tissue.Tissue method)
(shamo.core.objects.abc.ObjABC method)
(shamo.core.objects.dir.ObjDir method)
(shamo.core.objects.file.ObjFile method)
(shamo.core.problems.parametric.abc.ProbParamABC method)
(shamo.core.problems.parametric.components.tissue_property.CompParamTissueProp method)
(shamo.core.problems.parametric.components.value.CompParamValue method)
(shamo.core.problems.parametric.getdp.ProbParamGetDP method)
(shamo.core.problems.single.abc.ProbABC method)
(shamo.core.problems.single.components.abc.CompABC method)
(shamo.core.problems.single.components.file_path.CompFilePath method)
(shamo.core.problems.single.components.grid_sampler.CompGridSampler method)
(shamo.core.problems.single.components.sensors.CompSensors method)
(shamo.core.problems.single.components.tissue_property.CompTissueProp method)
(shamo.core.problems.single.components.tissues.CompTissues method)
(shamo.core.problems.single.getdp.ProbGetDP method)
(shamo.core.solutions.parametric.abc.SolParamABC method)
(shamo.core.solutions.parametric.getdp.SolParamGetDP method)
(shamo.core.solutions.single.getdp.SolGetDP method)
(shamo.core.surrogate.abc.SurrABC method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalar method)
(shamo.core.surrogate.masked_scalar.SurrMaskedScalarNii method)
(shamo.core.surrogate.scalar.SurrScalar method)
(shamo.eeg.leadfield.parametric.problem.ProbParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.solution.SolParamEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfield method)
(shamo.eeg.leadfield.parametric.surrogate.SurrEEGLeadfieldToRef method)
(shamo.eeg.leadfield.single.problem.ProbEEGLeadfield method)
(shamo.eeg.leadfield.single.solution.SolEEGLeadfield method)
(shamo.hd_tdcs.simulation.parametric.problem.ProbParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.solution.SolParamHDTDCSSim method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiMagJ method)
(shamo.hd_tdcs.simulation.parametric.surrogate.SurrMaskedScalarNiiV method)
(shamo.hd_tdcs.simulation.single.problem.ProbHDTDCSSim method)
(shamo.hd_tdcs.simulation.single.solution.SolHDTDCSSim method)
view() (shamo.core.fem.field.Field property)
vol() (shamo.core.fem.tissue.Tissue property)
W
width() (shamo.core.fem.sensors.surface.RectSensor property)
write() (shamo.utils.logging.StreamToLogger method)