shamo
Quickstart guide
Install
Install binary dependencies
CGAL
Gmsh
GetDP
Install shamo
Pip
Setup.py
Usage
Mesh generation
Finite element model from labels
Finite element model from another model
Finite element model from surfaces with default mesh size
Finite element model from surfaces with constant mesh size
Finite element model from surfaces with per tissue mesh size
Finite element model from labels
EEG
EEG leadfield computation - On all ROI elements
EEG leadfield computation - On equidistant elements
EEG leadfield computation - On regular grid
EEG parametric leadfield computation - On all ROI elements
EEG parametric leadfield computation - On equidistant elements
EEG parametric leadfield computation - On regular grid
EEG parametric leadfield surrogate model
EEG parametric leadfield sensitivity analysis
HD-tDCS
HD-tDCS simulation
HD-tDCS simulation
HD-tDCS parametric simulation
Logging
API reference
FEM
EEG
Leadfield
HD-tDCS
Full reference
shamo.cli
shamo.cli.report
shamo.core
shamo.core.distributions
shamo.core.distributions.abc
shamo.core.distributions.constant
shamo.core.distributions.normal
shamo.core.distributions.uniform
shamo.core.fem
shamo.core.fem.fem
shamo.core.fem.field
shamo.core.fem.group
shamo.core.fem.sensors
shamo.core.fem.tissue
shamo.core.objects
shamo.core.objects.abc
shamo.core.objects.dir
shamo.core.objects.file
shamo.core.problems
shamo.core.problems.parametric
shamo.core.problems.single
shamo.core.solutions
shamo.core.solutions.parametric
shamo.core.solutions.single
shamo.core.surrogate
shamo.core.surrogate.abc
shamo.core.surrogate.masked_scalar
shamo.core.surrogate.scalar
shamo.eeg
shamo.eeg.leadfield
shamo.eeg.leadfield.parametric
shamo.eeg.leadfield.single
shamo.hd_tdcs
shamo.hd_tdcs.simulation
shamo.hd_tdcs.simulation.parametric
shamo.hd_tdcs.simulation.single
shamo.utils
shamo.utils.geometry
shamo.utils.geometry.Plane3D
shamo.utils.logging
shamo.utils.logging.stream_to_logger
shamo.utils.logging.subprocess_to_logger
shamo.utils.logging.StreamToLogger
shamo.utils.onelab
shamo.utils.onelab.get_elems_coords
shamo.utils.onelab.get_elems_subset
shamo.utils.onelab.gmsh_open
shamo.utils.onelab.pos_to_nii
shamo.utils.onelab.read_vector_file
shamo.utils.path
shamo.utils.path.get_relative_path
shamo
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Full reference
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shamo.utils
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shamo.utils.geometry
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shamo.utils.geometry
¶
Provide geometric utilities.
Classes
Plane3D
A 3D plane.